src.measure.pixel_intensity module

src.measure.pixel_intensity.intensity_ts(msk, measure, dz, outline)

msk,measure: imagestacks with type bool and float respectively dz: relative shift in stack positions at which pixel intensity is measured return shape: (#time points, #pixels in msk, # channels)

src.measure.pixel_intensity.roi_to_stkmask(imshape, zgroups, path_circles)

src.measure.pixel_intensity.ts_embryo(imstkgr, NEWEXC, speedmsk, NMAX=100)